Return to the Serra da Estrela


Back in October I wrote about the algae and other plants that I had found in a small stream draining the Serra da Estrela mountains in Portugal (see “Notes from the Serra da Estrela”).  I’ve now had a chance to look more closely at the diatoms that I found there, and can offer a few thoughts on the ecology of the stream.

I collected two samples from the stream: one by brushing the top surface of the granite stones with a toothbrush and the other from the darker patches that I described in the earlier post.   These were a mix of algae and mosses, with the former dominated by cyanobacterial filaments and diatoms.   I merged the two samples prior to digesting them, but the biofilm on the submerged rocks was very thin so it is the diatoms from the dark patches that dominate the slide that I prepared from this stream.   As my preliminary observations suggested, motile diatoms were very abundant in this sample, with Surirella roba, Navicula angustaand N. exilis all common, along with some Pinnularia and Nitzschia.   I do not often find motile diatoms to be quite so abundant in fast-flowing upland streams, but I suspect that this is because I look in the wrong places.   Our standard sampling method involves scrubbing the tops of submerged stones which, in this type of stream at least, are not situations where motile diatoms thrive.  By contrast, the tangle of cyanobacterial filaments and dead organic matter creates a very different environment, where an ability to adjust position in order to move away from densely-shaded areas and, perhaps, from situations where bacteria and fungi had used up all the available oxygen, was an advantage.


Surirella robafrom the stream at Unhais de Serra, September 2018; a. – f.: valve views; g. – i.: girdle views. Scale bar: 10 micrometres (= 1/100thof a millimetre). The photo at the top of the post shows the view along the valley of the Rio Zêzere towards Mantiegas in the Serra da Estrela.


Miscellaneous diatoms from the stream at Unhais de Serra, September 2018: a. – d.: Cocconeis placentula, complete frustule, rapheless valve and two raphe valves; e. – g.: Navicula exilis; h. N. angusta; i. – k.: Pinnularia subcapitata, two valve views and a girdle view.  Scale bar: 10 micrometres (= 1/100thof a millimetre). 

A chain-forming species of Fragilariawas abundant in the original sample although, by the time I had prepared a slide, the chain had disintegrated into individuals or pairs of cells.  These all belonged to a member of the Fragilaria capucinacomplex, though I am not sure which one. There were also a few cells of the free-living (i.e. non-chain-forming) Fragilaria gracilis.    Eunotia minoror a close relative was also present, sometimes also forming short chains and, finally, I found a number of cells of Cocconeis placentula(possibly var. klinoraphis).

These are all diatoms that I would expect to find in a stream draining a hard rock such as granite in an area that is remote from any industrial or mining influences that might lead to artificial acidification.   There are mines in the area, but these are further south.  These do have a measurable effect on the biology of local streams, as the references at the end of this post attest.   However, this particular stream appears to be in rude health.

A curious side-effect of the years that I have spent looking at diatoms is that a sample such as this can evoke the environments from which it came: an assemblage of soft-water circumneutral diatoms conjures, in my mind, a particular landscape.   The label on the slide, of course, takes me straight back to our time in the Serra da Estrela but, in a more general sense, the diatoms capture an essence that transcends any one particular time or place.   Analysing diatom slides can become an escape from the humdrum and a chance to remember warmer days …


Fragilaria species from the stream at Unhais de Serra, September 2018: a. – g.: chain-forming member of Fragilaria capucina complex (a.-c.: valve views; d.-g.: girdle views); h.-j.Fragilaria gracilis.  Scale bar: 10 micrometres (= 1/100th of a millimetre).


Eunotiacf. minorfrom the stream at Unhais de Serra, September 2018: j. – n.: valve views; o. valve view of a related species; p. girdle views. Scale bar: 10 micrometres (= 1/100thof a millimetre). 


Luis, A.T., Teixeira, P., Almeida, S.F.P., Matos, J.X. & Silva, E.F. (2004).  Environmental impact of mining activities in the Lousal area (Portugal): Chemical and diatom characterization of metal-contaminated stream sediments and surface water of Corona stream.  Science of the Total Environment409: 4312-4325.

Silva E.F., Almeida, S.F.P., Nunes, M.L. & Fredrik, A.T.L. (2009). Heavy metal pollution downstream the abandoned Coval da Mó mine (Portugal) and associated effects on epilithic diatom communities.  Science of the Total Environment407: 5620-5636.


Algae from the Alto Duoro …

From the highlands of Serra da Estrela w headed north-west towards the vineyards of the Duoro Valley from which the grapes that make port are picked.  I’m supposed to be on holiday but, as the narrow road twists and turns down a steep hillside, with vineyards on both sides, I see a case study in how humans alter rivers and their catchments to suit their needs.  I wonder if the passengers on the cruise ships that move sedately through this beautiful landscape have any idea of just how difficult this same journey would have been just fifty years ago.   Now there are 51 large dams within the watershed, regulating the flow and, at the same time, generating much-needed hydroelectricity.   Before these were in place, the only way to get the port from the quintas in the Alto Duoro to Porto was to load the barrels onto a “barco rabelo”, and then to plot a perilous path through the rapids before using a combination of sail, oars and oxen to make the slow journey back upstream (you can see videos of these journeys on YouTube).

A replica of a barco rabelo moored in the Rio Duoro at Porto, September 2018.

The Rio Douro is a type of river that is rare in the UK but very common throughout the rest of Europe in that it crosses (and, for part of its course, forms) national boundaries.  There are a few rivers in Ireland which straddle borders (the Foyle is one, and some of the headwaters of the Shannon can be found in County Fermanagh) but, mostly, this is a complication that our river managers do not have to face.  By contrast, eighty per cent of the Rio Douro’s catchment lies in Spain (where it is called the Duero) and it is actually the largest watershed on the Iberian Peninsula.   The whole European project, and its environmental policy in particular, makes so much more sense when you are looking at a well-travelled river.

Our immediate objective was the Quinta do Bomfin at Pinhão, which produces grapes for Cockburns’, Dow’s and Taylor’s ports.  However, after a morning walking through the vineyards and following a tour of the winery (the robot that has replaced human grape treaders has, we learned, been carefully calibrated to match the pressure that a human foot exerts, lest the grape seeds are crushed, imparting bitterness to the resulting wine) plus some port tasting, the lure of the river was too strong.

A view across the Douro Valley from Quinta do Bomfin at Pinhão.   This, and the previous two photographs, were taken by Heather Kelly.

The river bank at Pinhão is lined with rip rap (loose stones) enclosed in mesh cages to protect it from erosion from the waves created by the many cruise ships that make their way up the river with tourists.   This, along with the floating jetties at which they embark and disembark, meant that it was not easy to get access to the river; however, I eventually found a small slipway close to the point where a small tributary joins.  There were a few loose stones with a green film in shallow water that I could just reach, plus some algal mats coating the concrete of the slipway at water level.   I managed to get small samples of each to bring back for closer examination, attracting the usual curious stares from passers-by in the process.

The mats on the slipway were composed of an alga (technically, a cyanobacterium) that has featured in this blog on several occasions in the past: Phormidium autumnale (see “In which the spirit of Jeremy Clarkson is evoked”).   This is the time of year when the Douro is at its lowest so living at this point on the slipway means that it spends a small part of the year exposed to the air, but most of it submerged.

Phormidium cf autumnale on a slipway beside the Rio Douro at Pinhão, September 2018.  The left hand image shows the mats on the lower part of the slipway; the right hand image shows individual filaments.  Scale bar: 20 micrometres (= 1/50th of a millimetre).

The stones beside the slipway had a thick greenish film which, when I looked at it under a microscope, turned out to consist largely of bundles of thin cyanobacterial filaments belonging to a relative of Phormidium: Homoeothrix janthina (kindly identified for me by Brian Whitton).   Homoeothrix differs from Phormidium in that the filament are often slightly tapered, rather than straight-sided and usually aggregated into colonies, often growing vertically towards the light rather than intertwined to form mats.   It is a genus that I see in the UK (including, sometimes, in the River Wear) but which I have not previously written about on this blog.   The photos below show tufts of filaments but it would be quite easy to imagine several of these clumps joined together to form a hemispherical colony, before I disrupted them with my vigorous sampling technique.

Left: the rip rap at the edge of the Douro at Pinhão from which I sampled algae in September 2018; right: the stone after vigorous brushing with a toothbrush.

Bundles of filaments of Homoethrix janthina from the River Douro at Pinhão. Scale bar: 20 micrometres (= 1/50th of a millimetre).

Many of my posts try to make the link between the algae that I find in lakes and rivers and physical and human factors in those water bodies and their surroundings.  That is not an easy task in a large river basin such as that of the Douro as there is so much more of a hinterland including large towns in Spain such as Valladolid.   The river, to some extent, integrates all of these influences and, whereas the vines around Pinhão have their roots in nutrient-poor granite and schist soils, the river’s journey to this point has covered a range of different rock types, including chalky clay soils in the Spanish part of the catchment and the water reflect this.   This cocktail of physical alteration and pollution, shaken up with a dash of international relations, recurs in the largest rivers throughout Europe and is either a fascinating challenge for an ecologist or a complete pain in the backside, depending on your point of view.

I’ll come back to the Douro in a few weeks, once I’ve had a chance to have a closer look at the diatoms.  Meanwhile, I have one more stop on my travels along the Rio Douro, at the port lodges of Vila Nova de Gaia to try some vintage port …


Bordalo, A.A., Teixeira, R. & Wiebe, W.J. (2006).  A water quality index applied to an international shared river basin: the case of the Douro River.  Environmental Management 38: 910-920.

The end of the journey: port maturing in barrels at Cockburn’s lodge in Vila Nova de Gaia.


Notes from the Serra de Estrela

At the end of my last post I suggested that the next time I wrote it may be from Portugal.   In reality, tiredness and, to be frank, a steady consumption of Vino Verde intervened and this post may be about Portugal but is not, alas, written from that country.   Our travels took us from Lisbon northwards to Covilhã, a town on the edge of the Serra da Estrela mountain range, then onwards to the Duoro valley and Porto, and finally back to Lisbon.   The lower part of the Duoro is the home to many of the Vino Verde vineyards, although our focus was mostly on the vineyards further upstream from which the grapes for port are grown.  I’ll write more about the Duoro in a later post but, first, I want to take you on a journey to the Serra da Estrela.

These are the highest mountains in mainland Portugal (there is a higher point in the Azores) with a summit at 1993 metres at Torre.  Unusually, for the highest peak in a mountain range, there is a road all the way to the top, along with a couple of shops and a small bar/restaurant.   On the day we visited, a couple of hardy cyclists had toiled their way up from the plains but most of the visitors had driven up.   We had stopped on our route up from Covilhã to explore the granite landscape and botanise so felt that we had earned our bica and Pastéis de Nata by the time we got to the very top.

Much as I appreciate a summit that satisfies a caffeine addiction, the real interest lies elsewhere, with the road up from Covilhã passing through some dramatically-eroded granite outcrops, composed of huge boulders apparently perched precariously on top of each other.  These resemble the granite “tors” we find in Dartmoor in south-west England, and have a similar origin.   The area around the tors had distinctive vegetation that will, no doubt, be described in greater length in a post on Heather’s blog before too long.   The free-draining sandy soils that the granite landscape creates mean that there was not a lot of surface water for me to indulge my own passions, so I will have to take you to another part of the Serra da Estrela for the remainder of this post.

Granite landscapes near Torre in the Serra da Estrela Natural Park in northern Portugal, September 2018.  

We found an inviting stream as we were walking near Unhais de Serra, at the southern end of the Natural Park.  The first plants to catch our eye were a submerged Ranunculus species with finely-divided leaves and five-petelled white flowers sitting at the water surface.   As well as these, we could see shoots of patches of water dropwort (Oenanthe sp.) and, looking more closely, several of these appeared to be growing out of dark coloured patches which turned out to be a submerged moss overgrown with algae (more about which a little later).   I am guessing that, once the rains come, much of these mini-ecosystems will be washed downstream leaving just a few moss stems to be colonised again next year.

Submerged vegetation in the stream at Unhais de Serra in September 2018 (40°15’44” N 7°37’21” W).  The top photograph shows a Ranunculus species and the lower photograph shows mosses overgrown with algae (a mixture of Cyanobacterial filaments, diatoms and coccoid green algae), within which young plants of Oenanthe sp. have taken root (top photograph: Heather Kelly).

Somewhat to my surprise there were also some patches of Lemanea.   This is a red algal genus that I usually associate with late winter and spring in my own part of the world, so I had not expected to find such prolific growths at this time of year at lower latitudes.   Maybe Iberian species of Lemanea behave differently to those with which I am familiar?

The Lemanea species found in the stream at Unhais de Serra in September 2018.  The top photograph shows it growing in situ and the lower photograph is a close-up.  The filaments are about a millimetre wide.

The dark film itself contained a variety of algae, some of which I have put in a plate below.   There were some cyanobacterial filaments which looked like Oscillatoria to me but which were not moving (their life between collection and examination was less than ideal).  There were also a large number of diatoms, mostly Navicula and Surirella.  Again, both would have been moving around in a healthy sample but were static when I got around to examining them; the chloroplasts in the Surirella, in particular, were not in very good condition).  I also saw some chains of Fragilaria species and several small green algae (especially Monoraphidium, discussed in the previous post).  I’ll return to the diatoms in a future post, once I have been able to get permanent slides prepared and examined but first impression is that I am looking at a community from a low nutrient, circumneutral environment.

Some of the algae living in the dark films overgrowing mosses in the stream at Unhais de Serra in September 2018.   a. – c.: Navicula angusta; d. –g. Surirella cf. roba; h. – i. two different chain-forming Fragilaria sp.; j. – k.: Navicula cf cryptocephala; l. – m.: Oscillatoria sp.    Scale bar: 20 micrometres (= 1/50th of a millimetre). 

The diatoms, in particular, reiterate the important point that notwithstanding the huge number of new species that have been described in recent years, it is possible to peer through a microscope at a sample from anywhere in Europe and see a familiar set of outlines that, for the most part, give a consistent interpretation of environmental conditions wherever you are (see, for example, “Lago di Maggiore under the microscope”).   That same rationale applies, to some extent to other organism groups too: we have recently shown this for macrophytes in shallow lakes for example.   Likewise, the geology here was shaped by the same broad forces that created the landscape of south-west England even if local climate means that the flora surrounding the tors in the Serra da Estrela is adapted to more arid conditions than that on Dartmoor.    It is important that, when we travel, we see the differences but, perhaps even more important in this fractured age, that we see the similarities too.


Chapuis, I.S., Sánchez-Castillo, P.M. & Aboal Sanchero, M. (2014).  Checklist of freshwater red algae in the Iberian Penisula and the Balearic Islands.   Nova Hedwigia 98: 213-232.

Poikane, S., Portielje, R., Deny, L., Elferts, D., Kelly, M., Kolada, A., Mäemets, H., Phillips, G., Søndergaard, M., Willby, N. & van den Berg, M. (2018).   Macrophyte assessment in European lakes: Diverse approaches but convergent views of ‘good’ ecological status.  Ecological Indicators 94: 185-197.